Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs77600190 chr7:44341600 A/T 1.56E-5 495 31.87 30.53 18.65 KM Plot
THCA rs7761207 chr6:133110430 G/A 7.56E-5 498 31.47 35.2 23.53 KM Plot
THCA rs7770081 chr6:133089569 G/T 5.51E-12 503 31.53 32.43 30.53 KM Plot
THCA rs77702899 chr1:152968025 C/G 0.000141 501 31.53 32.37 37.7 KM Plot
THCA rs77729635 chr16:79272144 C/T 5.77E-12 501 31.5 31 19.35 KM Plot
THCA rs7775241 chr6:133109022 T/C 7.56E-5 498 31.47 35.2 23.53 KM Plot
THCA rs77767889 chr10:29329679 G/T 2.68E-9 501 31.8 30.13 29.28 KM Plot
THCA rs77827514 chr10:104822009 C/T 6.92E-14 503 31.27 35.33 32.1 KM Plot
THCA rs77844996 chr10:94463560 T/A 0.000132 500 31.47 33.68 18.55 KM Plot
THCA rs7789356 chr7:43931810 C/T 1.55E-9 499 31.03 34.4 31.03 KM Plot
THCA rs77925313 chr16:79270448 T/C 3.55E-13 487 31.62 31.67 19.35 KM Plot
THCA rs77926209 chr6:26245566 C/A 5.95E-12 500 31.77 27.43 19.87 KM Plot
THCA rs77958880 chr16:79270245 T/C 3.55E-13 487 31.62 31.67 19.35 KM Plot
THCA rs77969925 chr10:104649357 C/T 3.21E-9 500 31.03 35.33 29.58 KM Plot
THCA rs78073526 chr1:152901982 G/C 2.89E-5 501 31.33 34.43 37.7 KM Plot